Oleksii Gryniuk

Theoretical Physics, Quantum Theory, High Performance Computing, Computer Graphics, Computer Networks

Employment

2021 – 2023

Postdoc, Computational Biophysics; Trento Institute for Fundamental Physics and Applications, Italy

Applied transition-path theory to protein folding molecular dynamics (Gromacs, Python and MDAnalysis), resulting in a variational estimate of the committor function for fast-folding proteins. Automated production and analysis of ratchet-and-pawl Gromacs simulations on a cluster (Bash, Makefile). Co-lectured a course on molecular physics for biology and computer science students. Assisted in maintaining servers and computer cluster infrastructure (Proxmox, Debian, Wordpress, Bash, slurm).

2015 – 2019

PhD student, Theoretical Nuclear Physics; Johannes Gutenberg University of Mainz, Germany

Conducted a supervised research (Python, FORM, pen) on application of dispersion relations in quantum field theory to various hadronic processes, contributing to several highly-cited papers. Did 3 semesters of teaching assistance in quantum mechanics and basic quantum field theory.

2014

Python developer at ScienceWISE project; Swiss Federal Institute of Technology Lausanne, Switzerland

Developed and monitored backend systems for ScienceWISE project (Django, MySQL, Python, Bash) improving data management and user experience.

Education

2015 – 2020

PhD, Theoretical Physics; Johannes Gutenberg University of Mainz, Germany

Thesis: “Dispersion relations in two-photon hadronic processes”

Extended MSc study to a broader range of hadronic interactions, namely the timelike Compton scattering, the quarkonium – proton scattering, and the hadronic light-by-light scattering in relation to muon’s anomalous magnetic moment. The research resulted in multiple highly-cited papers.

2013 – 2015

MSc, Theoretical Physics; Taras Shevchenko National University of Kyiv, Ukraine

Thesis: “Causality constraints on the forward Compton scattering of the proton”

For the thesis, performed numerical calculations for the forward Compton scattering off the proton as a probe of its low-energy electromagnetic response structure, resulting in two published papers.

2009 – 2013

BSc, Theoretical Physics; Taras Shevchenko National University of Kyiv, Ukraine

Thesis: “Maximal abelian gauge fixing in SU(2) lattice gluodynamics with OpenCL”

Obtained a ground knowledge of general sections of physics, with extensive classes in mathematics and computational methods. Got basic experience of programming in C and C++. For the thesis, (re)implemented a subroutine for the maximal abelian gauge fixing of SU(2) Yang-Mills field on a lattice with OpenCL for GPUs.

Technical Experience

Programming Languages

Python: Deep knowledge of the core language features, extensive experience of scientific calculations with NumPy/SciPy (data fitting and numerical integration, statistics), visualization for publications, automation. Practical familiarity with building web apps on Flask + SQL. Interoperability with C and other languages. Check out my Github gists for code samples: https://gist.github.com/neuton.

C: Decent knowledge from undergrad on efficient numerical methods for solving linear algebra and calculus problems. Practiced OpenCL and CUDA usage for GPGPU calculations.

FORM: Did symbolic algebra on particle scattering amplitudes for my PhD research.

Haskell: Loved it. Never used.

Familiar with C++, Fortran, Pascal, Bash, Makefile etc.

System Admin
Practical experience with managing my own and public Linux machines: HTTP servers, Proxmox hypervisors, NAS, computing clusters (slurm); TCP/IP networking setup and computer hardware assembly.
Computer Graphics
Wrote a (software) rasterizer engine with bump-mapping support in Pascal in my first-year undergrad. Using Blender as my main and only tool for amateur 3D modelling and a bit of visualization for science. Having fun doing random experiments like 3D animation in Python via Matplotlib.
Hackatons
Ernst & Young Smart City Hackathon: together with a teammate, created a demo Flask web app from scratch over a 24-hour shift.

Teaching

2021 / 2022

Co-lecturer, Introduction to Molecular Physics; University of Trento, Italy

Co-lectured a course on molecular physics for biology and computer science students, from the ground-up to the basics of quantum theory of molecular interactions. Composed lectures on the introductory hands-on mixture of multivariable calculus, mathematical physics and quantum mechanics.

2017 / 2018

Teaching assistant, Quantum Field Theory; Johannes Gutenberg University of Mainz, Germany

Led classes on solving exercises on introductory quantum field theory. Graded homeworks and final exam.

2017

Teaching assistant, Quantum Mechanics; Johannes Gutenberg University of Mainz, Germany

Supervised creation and assembly of exercises and final exam for undergrad physics students for the introductory quantum mechanics course.

2016 / 2017

Teaching assistant, Advanced Quantum Mechanics; Johannes Gutenberg University of Mainz, Germany

Led classes on solving exercises on relativistic many-body theory / quantum field theory and graded students’ homeworks.

Publications

July 2020

O. Gryniuk, S. Joosten, Z.-E. Meziani, M. Vanderhaeghen, Υ photo-production on the proton at the Electron-Ion Collider”

Phys. Rev. D 102 (2020) no.1, 014016 (e-Print: arXiv:2005.09293 [hep-ph]).

October 2018

A. Gérardin, J. Green, O. Gryniuk, G. von Hippel, H. B. Meyer, V. Pascalutsa, H. Wittig, “Hadronic light-by-light scattering amplitudes from lattice QCD versus dispersive sum rules”

Phys. Rev. D 98 (2018) no.7, 074501 (e-Print: arXiv:1712.00421 [hep-lat])

August 2016

O. Gryniuk, M. Vanderhaeghen, “Accessing the real part of the forward J/ψ-p scattering amplitude from J/ψ photoproduction on protons around threshold”

Phys. Rev. D 94 (2016) no.7, 074001 (e-Print: arXiv:1608.08205 [hep-ph])

April 2016

O. Gryniuk, F. Hagelstein, V. Pascalutsa, “Evaluation of the forward Compton scattering off protons: II. Spin-dependent amplitude and observables”

Phys. Rev. D 94 (2016) no.3, 034043 (e-Print: arXiv:1604.00789 [nucl-th])

August 2015

O. Gryniuk, F. Hagelstein, V. Pascalutsa, “Evaluation of the forward Compton scattering off protons: Spin-independent amplitude”

Phys. Rev. D 92 (2015) 074031 (e-Print: arXiv:1508.07952 [nucl-th])

July 2015

J. Green, O. Gryniuk, G. von Hippel, H. B. Meyer, V. Pascalutsa, “Lattice QCD calculation of hadronic light-by-light scattering”

Phys. Rev. Lett. 115 (2015) 22, 222003 (e-Print: arXiv:1507.01577 [hep-lat])

Conference Proceedings

January 2018

N. Asmussen et al., “Hadronic light-by-light scattering contribution to the muon g – 2 on the lattice”

EPJ Web Conf. 179 (2018) 01017 (e-Print: arXiv:1801.04238 [hep-lat])

December 2017

I. V. Anikin et al., “Nucleon and nuclear structure through dilepton production”

Acta Phys. Polon. B 49 (2018) 741 (e-Print: arXiv:1712.04198 [nucl-ex])

October 2017

A. Gerardin, J. Green, O. Gryniuk, G. von Hippel, H. B. Meyer, V. Pascalutsa, H. Wittig, “Light-by-light forward scattering amplitudes in Lattice QCD”

EPJ Web Conf. 175 (2018) 06030 (e-Print: arXiv:1710.09359 [hep-lat])

October 2015

J. Green, N. Asmussen, O. Gryniuk, G. von Hippel, H. B. Meyer, A. Nyffeler, V. Pascalutsa, “Direct calculation of hadronic light-by-light scattering”

PoS LATTICE 2015 (2016) 109 (e-Print: arXiv:1510.08384 [hep-lat])

Schools & Conferences

September 2018
Summer School on Symmetries, Fundamental Interactions and Cosmology, Frauenchiemsee, Germany
September 2018
SFB 1044 School on Hadronic Physics, Boppard, Germany
October 2017
Fall Meeting of the APS Division of Nuclear Physics (DNP 2017), Pittsburgh, USA; talk on “Accessing the real part of the forward elastic J/ψ - p and ϕ - p threshold scattering amplitudes”
August 2017
SFB 1044 School on Hadronic Physics, Boppard, Germany
June 2017
International workshop on e+e collisions from Phi to Psi (PhiPsi17), Mainz, Germany; poster on “Accessing the real part of the forward elastic ψ/ϕ - p scattering amplitude close to threshold”
April 2017
ECT* Trento Workshop “The Proton Mass: At the Heart of Most Visible Matter”, ECT*, Trento, Italy; talk on “Accessing the real part of the forward elastic J/ψ - p and ϕ - p scatterings amplitudes close to threshold”
October 2016
ECT* Trento Workshop “Nuclear and Nucleon Structure Through Dileptons Production”, ECT*, Trento, Italy; gave 2 talks on relevant topics
October 2016
SFB 1044 School on Hadronic Physics, Boppard, Germany; student talk
September 2016
International Workshop “Hadronic Contributions to New Physics Searches”, Puerto de la Cruz, Spain; took part as a scientific secretary of the conference
September 2016
Summer School on Symmetries, Fundamental Interactions and Cosmology, Frauenchiemsee, Germany; student talk
November 2015
11th European Research Conference “Electromagnetic Interactions with Nucleons and Nuclei”, Paphos, Cyprus; student talk & poster session
October 2015
Collaborative Research Center 1044 (SFB 1044) School on Hadronic Physics, Boppard, Germany
March 2015
Research Conference “Deutsche Physikalische Gesellschaft Spring Meeting”, HU, Heidelberg, Germany; a talk on the ongoing work on master’s thesis
September 2013
Summer School on Particle Phenomenology, Tbilisi, Georgia

Miscellaneous